Gm28707 Gene Detail

Summary

• Symbol
  Gm28707
• Name
  predicted gene 28707

• Feature Type
  lncRNA gene
• IDs
  MGI:5579413
  NCBI Gene: 108168079
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:42202037-42204051 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579413	lncRNA gene	Chr13:42200138-42204051 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005453	lincRNA gene	Chr13:40572479-40573423 (+)
A/J	MGP_AJ_G0005439	lincRNA gene	Chr13:39217982-39218909 (+)
AKR/J	MGP_AKRJ_G0005418	lincRNA gene	Chr13:40298193-40299124 (+)
BALB/cJ	MGP_BALBcJ_G0005420	lincRNA gene	Chr13:39415840-39416767 (+)
C3H/HeJ	MGP_C3HHeJ_G0005368	lincRNA gene	Chr13:40158485-40159409 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005575	lincRNA gene	Chr13:41854329-41855273 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004952	lincRNA gene	Chr13:37324351-37325294 (+)
CAST/EiJ	MGP_CASTEiJ_G0005311	lincRNA gene	Chr13:39966206-39967149 (+)
CBA/J	MGP_CBAJ_G0005357	lincRNA gene	Chr13:43646807-43647731 (+)
DBA/2J	MGP_DBA2J_G0005373	lincRNA gene	Chr13:38778399-38779311 (+)
FVB/NJ	MGP_FVBNJ_G0005399	lincRNA gene	Chr13:38291254-38292181 (+)
LP/J	MGP_LPJ_G0005456	lincRNA gene	Chr13:40822463-40823407 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005382	lincRNA gene	Chr13:43583971-43584898 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005575	lincRNA gene	Chr13:39949008-39949952 (+)
PWK/PhJ	MGP_PWKPhJ_G0005260	lincRNA gene	Chr13:38871588-38872521 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005180	lincRNA gene	Chr13:38580853-38581814 (+)
WSB/EiJ	MGP_WSBEiJ_G0005360	lincRNA gene	Chr13:40250133-40251057 (+)

Homology

• Gene Tree
  Gm28707
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28707
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000100071 (Evidence)
• NCBI Gene
  108168079

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100071	Ensembl Gene Model | MGI Sequence Detail	2015	C57BL/6J
transcript	ENSMUST00000337885	Ensembl | MGI Sequence Detail	1220	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm28707:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119424	Chr13:42202843-42202845 (+)	807 bp
Tssr119425	Chr13:42203071-42203082 (+)	1,040 bp