Cdhr17 Gene Detail

Summary

• Symbol
  Cdhr17
• Name
  cadherin related family member 17
• Synonyms
  Gm28710

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5579416
  NCBI Gene: 102640594
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr5:16996789-17087437 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  2838 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579416	protein coding gene	Chr5:16996789-17087437 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006583	lincRNA gene	Chr5:14217993-14220868 (+)
A/J	MGP_AJ_G0006576	lincRNA gene	Chr5:13784744-13786488 (+)
AKR/J	MGP_AKRJ_G0006547	lincRNA gene	Chr5:14414721-14416465 (+)
BALB/cJ	MGP_BALBcJ_G0006551	lincRNA gene	Chr5:14199661-14201405 (+)
C3H/HeJ	MGP_C3HHeJ_G0006498	lincRNA gene	Chr5:14376555-14378299 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006715	lincRNA gene	Chr5:15500238-15501982 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005985	lincRNA gene	Chr5:12098524-12100490 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0006481	lincRNA gene	Chr5:15444903-15447779 (+)
DBA/2J	MGP_DBA2J_G0006501	lincRNA gene	Chr5:14060041-14061916 (+)
FVB/NJ	MGP_FVBNJ_G0006525	lincRNA gene	Chr5:13498530-13500245 (+)
LP/J	MGP_LPJ_G0006584	lincRNA gene	Chr5:14641179-14644446 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0006721	lincRNA gene	Chr5:14004449-14006193 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0006274	lincRNA gene	Chr5:13352109-13353857 (+)
WSB/EiJ	MGP_WSBEiJ_G0006475	lincRNA gene	Chr5:14010969-14013109 (+)

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Cdhr17
• Find Mice (IMSR)
  17 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000099854 (Evidence), ENSMUSG00000109903 (Evidence)
• NCBI Gene
  102640594

Representative Sequences			Length	Strain/Species
genomic	102640594	NCBI Gene Model | MGI Sequence Detail	90649	C57BL/6J
transcript	NM_001378608	RefSeq | MGI Sequence Detail	3393	ZRU/MplStud
polypeptide	NP_001365537	RefSeq | MGI Sequence Detail	962	ZRU/MplStud

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR020894 Cadherin conserved site
  IPR002126 Cadherin-like
  IPR015919 Cadherin-like superfamily
  IPR050174 Protocadherin/Cadherin-related Cell Adhesion

Other
Accession IDs

MGI:7382745

References

• Summaries
  All 16

  Diseases 1

  Gene Ontology 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:119563 Alt B, et al., Arteries define the position of the thyroid gland during its developmental relocalisation. Development. 2006 Oct;133(19):3797-804

TSS for Cdhr17:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45231	Chr5:17075132-17075141 (+)	78,348 bp
Tssr45232	Chr5:17075165-17075176 (+)	78,382 bp
Tssr45233	Chr5:17075212-17075213 (+)	78,424 bp
Tssr45234	Chr5:17075222-17075236 (+)	78,440 bp
Tssr45235	Chr5:17075241-17075252 (+)	78,458 bp
Tssr45236	Chr5:17075253-17075261 (+)	78,468 bp