Gm28783 Gene Detail

Summary

• Symbol
  Gm28783
• Name
  predicted gene 28783

• Feature Type
  lncRNA gene
• IDs
  MGI:5579489
  NCBI Gene: 102634310
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:17194971-17199180 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  380 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579489	lncRNA gene	Chr1:17194971-17199180 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004776	lincRNA gene	Chr1:14646506-14663882 (+)
A/J	MGP_AJ_G0004757	lincRNA gene	Chr1:14462482-14466691 (+)
AKR/J	MGP_AKRJ_G0004736	lincRNA gene	Chr1:14477770-14481975 (+)
BALB/cJ	MGP_BALBcJ_G0004739	lincRNA gene	Chr1:14176846-14181055 (+)
C3H/HeJ	MGP_C3HHeJ_G0004687	lincRNA gene	Chr1:14527686-14532974 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004889	lincRNA gene	Chr1:15320267-15325030 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004643	lincRNA gene	Chr1:14569330-14574762 (+)
CBA/J	MGP_CBAJ_G0004680	lincRNA gene	Chr1:15637168-15643997 (+)
DBA/2J	MGP_DBA2J_G0004698	lincRNA gene	Chr1:14078570-14082779 (+)
FVB/NJ	MGP_FVBNJ_G0004718	lincRNA gene	Chr1:13842177-13846492 (+)
LP/J	MGP_LPJ_G0004777	lincRNA gene	Chr1:14844878-14850039 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004703	lincRNA gene	Chr1:16285489-16294535 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004893	lincRNA gene	Chr1:14451362-14455678 (+)
PWK/PhJ	MGP_PWKPhJ_G0004595	lincRNA gene	Chr1:13810703-13814885 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004685	lincRNA gene	Chr1:14402384-14407320 (+)

Homology

• Gene Tree
  Gm28783
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000100110 (Evidence)
• NCBI Gene
  102634310

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100110	Ensembl Gene Model | MGI Sequence Detail	4210	C57BL/6J
transcript	ENSMUST00000188872	Ensembl | MGI Sequence Detail	359	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;