Gm28800 Gene Detail

Summary

• Symbol
  Gm28800
• Name
  predicted gene 28800

• Feature Type
  lncRNA gene
• IDs
  MGI:5579506
  NCBI Gene: 102640008
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:127888603-127893724 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  299 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579506	lncRNA gene	Chr1:127887253-127895189 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002734	antisense lncRNA gene	Chr1:131180248-131188173 (+)
A/J	MGP_AJ_G0002710	antisense lncRNA gene	Chr1:126291028-126298953 (+)
AKR/J	MGP_AKRJ_G0002691	antisense lncRNA gene	Chr1:130004905-130012830 (+)
BALB/cJ	MGP_BALBcJ_G0002697	antisense lncRNA gene	Chr1:126665153-126673078 (+)
C3H/HeJ	MGP_C3HHeJ_G0002656	antisense lncRNA gene	Chr1:130197618-130205543 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002840	antisense lncRNA gene	Chr1:136109038-136116974 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002388	antisense lncRNA gene	Chr1:119647926-119656251 (+)
CAST/EiJ	MGP_CASTEiJ_G0002628	antisense lncRNA gene	Chr1:129157887-129169057 (+)
CBA/J	MGP_CBAJ_G0002651	antisense lncRNA gene	Chr1:140698609-140706580 (+)
DBA/2J	MGP_DBA2J_G0002657	antisense lncRNA gene	Chr1:125324269-125332194 (+)
FVB/NJ	MGP_FVBNJ_G0002677	antisense lncRNA gene	Chr1:124040474-124048472 (+)
LP/J	MGP_LPJ_G0002736	antisense lncRNA gene	Chr1:132527831-132535756 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002667	antisense lncRNA gene	Chr1:146549874-146557831 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002845	antisense lncRNA gene	Chr1:129800321-129808257 (+)
PWK/PhJ	MGP_PWKPhJ_G0002586	antisense lncRNA gene	Chr1:124300951-124308958 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002537	antisense lncRNA gene	Chr1:128744763-128752833 (+)
WSB/EiJ	MGP_WSBEiJ_G0002658	antisense lncRNA gene	Chr1:129749073-129756998 (+)

Homology

• Gene Tree
  Gm28800
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28800
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099760 (Evidence)
• NCBI Gene
  102640008

Representative Sequences			Length	Strain/Species
genomic	102640008	NCBI Gene Model | MGI Sequence Detail	5122	C57BL/6J
transcript	BC046462	GenBank | ENA | DDBJ | MGI Sequence Detail	2303	CZECHII

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45