Gm28818 Gene Detail

Summary

• Symbol
  Gm28818
• Name
  predicted gene 28818

• Feature Type
  lncRNA gene
• IDs
  MGI:5579524
  NCBI Gene: 102632274
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:71933225-71956284 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  831 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579524	lncRNA gene	Chr1:71932994-71956284 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004865	lincRNA gene	Chr1:72350692-72375968 (-)
A/J	MGP_AJ_G0004846	lincRNA gene	Chr1:69784979-69807909 (-)
AKR/J	MGP_AKRJ_G0004824	lincRNA gene	Chr1:71791307-71817033 (-)
BALB/cJ	MGP_BALBcJ_G0004827	lincRNA gene	Chr1:69918247-69941536 (-)
C3H/HeJ	MGP_C3HHeJ_G0004776	lincRNA gene	Chr1:72115741-72144010 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004978	lincRNA gene	Chr1:75163822-75190350 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004405	lincRNA gene	Chr1:65502909-65526179 (-)
CAST/EiJ	MGP_CASTEiJ_G0004729	lincRNA gene	Chr1:71378134-71404855 (-)
CBA/J	MGP_CBAJ_G0004769	lincRNA gene	Chr1:77630744-77656754 (-)
DBA/2J	MGP_DBA2J_G0004787	lincRNA gene	Chr1:69183639-69207283 (-)
FVB/NJ	MGP_FVBNJ_G0004807	lincRNA gene	Chr1:68368038-68391262 (-)
LP/J	MGP_LPJ_G0004866	lincRNA gene	Chr1:73416383-73440902 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004791	lincRNA gene	Chr1:81122908-81148963 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004982	lincRNA gene	Chr1:71796054-71824243 (-)
PWK/PhJ	MGP_PWKPhJ_G0004682	lincRNA gene	Chr1:68618138-68644725 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004608	lincRNA gene	Chr1:71195354-71224214 (-)
WSB/EiJ	MGP_WSBEiJ_G0004774	lincRNA gene	Chr1:71608489-71633512 (-)

Homology

• Gene Tree
  Gm28818
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28818
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  3

• Ensembl
  ENSMUSG00000101211 (Evidence)
• NCBI Gene
  102632274

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101211	Ensembl Gene Model | MGI Sequence Detail	23060	C57BL/6J
transcript	ENSMUST00000187553	Ensembl | MGI Sequence Detail	2989	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28818:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12151	Chr1:71935604-71935611 (-)	20,676 bp