Gm28857 Gene Detail

Summary

• Symbol
  Gm28857
• Name
  predicted gene 28857

• Feature Type
  lncRNA gene
• IDs
  MGI:5579563
  NCBI Gene: 102640440
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:130667655-130669028 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579563	lncRNA gene	Chr1:130667655-130691877 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002737	antisense lncRNA gene	Chr1:134138780-134139945 (-)
A/J	MGP_AJ_G0002713	antisense lncRNA gene	Chr1:129174656-129175821 (-)
AKR/J	MGP_AKRJ_G0002694	antisense lncRNA gene	Chr1:132980219-132981384 (-)
BALB/cJ	MGP_BALBcJ_G0002700	antisense lncRNA gene	Chr1:129509516-129510681 (-)
C3H/HeJ	MGP_C3HHeJ_G0002658	antisense lncRNA gene	Chr1:133116952-133118117 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002843	antisense lncRNA gene	Chr1:139123164-139124329 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002390	antisense lncRNA gene	Chr1:122320897-122322097 (-)
CAST/EiJ	MGP_CASTEiJ_G0002631	antisense lncRNA gene	Chr1:132109988-132111182 (-)
CBA/J	MGP_CBAJ_G0002654	antisense lncRNA gene	Chr1:143923131-143924326 (-)
DBA/2J	MGP_DBA2J_G0002660	antisense lncRNA gene	Chr1:128138658-128139823 (-)
FVB/NJ	MGP_FVBNJ_G0002680	antisense lncRNA gene	Chr1:126781827-126782992 (-)
LP/J	MGP_LPJ_G0002738	antisense lncRNA gene	Chr1:135451807-135452972 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002670	antisense lncRNA gene	Chr1:149690658-149691823 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002848	antisense lncRNA gene	Chr1:132744042-132745207 (-)
PWK/PhJ	MGP_PWKPhJ_G0002588	antisense lncRNA gene	Chr1:127113170-127114364 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002540	antisense lncRNA gene	Chr1:131670507-131671703 (-)
WSB/EiJ	MGP_WSBEiJ_G0002660	antisense lncRNA gene	Chr1:132707100-132708265 (-)

Homology

• Gene Tree
  Gm28857
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28857
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000099556 (Evidence)
• NCBI Gene
  102640440

Representative Sequences			Length	Strain/Species
genomic	102640440	NCBI Gene Model | MGI Sequence Detail	1374	C57BL/6J
transcript	NR_168728	RefSeq | MGI Sequence Detail	633	ZRU/MplStud

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm28857:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13525	Chr1:130669023-130669033 (-)	0 bp