Gm28875 Gene Detail

Summary

• Symbol
  Gm28875
• Name
  predicted gene 28875

• Feature Type
  lncRNA gene
• IDs
  MGI:5579581
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:104891760-104892948 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic

Strain
Comparison

• SNPs within 2kb
  142 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579581	lncRNA gene	Chr12:104891760-104892948 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005392	lincRNA gene	Chr12:106749797-106750438 (-)
A/J	MGP_AJ_G0005375	lincRNA gene	Chr12:102696109-102696750 (-)
AKR/J	MGP_AKRJ_G0005355	lincRNA gene	Chr12:105655066-105655777 (-)
BALB/cJ	MGP_BALBcJ_G0005357	lincRNA gene	Chr12:103103849-103104490 (-)
C3H/HeJ	MGP_C3HHeJ_G0005306	lincRNA gene	Chr12:106130306-106130947 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005511	lincRNA gene	Chr12:110048267-110048908 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004896	lincRNA gene	Chr12:99409795-99410497 (-)
CAST/EiJ	MGP_CASTEiJ_G0005250	lincRNA gene	Chr12:100965945-100966628 (-)
CBA/J	MGP_CBAJ_G0005295	lincRNA gene	Chr12:114302431-114303142 (-)
DBA/2J	MGP_DBA2J_G0005312	lincRNA gene	Chr12:102244128-102244839 (-)
FVB/NJ	MGP_FVBNJ_G0005338	lincRNA gene	Chr12:101033526-101034167 (-)
LP/J	MGP_LPJ_G0005394	lincRNA gene	Chr12:106622849-106623490 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005320	lincRNA gene	Chr12:117748591-117749302 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005512	lincRNA gene	Chr12:105081756-105082397 (-)
PWK/PhJ	MGP_PWKPhJ_G0005199	lincRNA gene	Chr12:96764237-96764933 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0005120	lincRNA gene	Chr12:99353464-99354057 (-)
WSB/EiJ	MGP_WSBEiJ_G0005300	lincRNA gene	Chr12:106062939-106063580 (-)

Homology

• Gene Tree
  Gm28875
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm28875
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100975 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100975	Ensembl Gene Model | MGI Sequence Detail	1189	C57BL/6J
transcript	ENSMUST00000185486	Ensembl | MGI Sequence Detail	1189	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28875:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr117591	Chr12:104893095-104893098 (-)	-149 bp