Gm28883 Pseudogene Detail

Summary

• Symbol
  Gm28883
• Name
  predicted gene 28883

• Feature Type
  pseudogene
• IDs
  MGI:5579589
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:135797520-135797888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579589	pseudogene	Chr1:135797520-135797888 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010352	pseudogene	Chr1:139657310-139657678 (+)
A/J	MGP_AJ_G0010339	pseudogene	Chr1:134373676-134374044 (+)
AKR/J	MGP_AKRJ_G0010309	pseudogene	Chr1:138372249-138372617 (+)
BALB/cJ	MGP_BALBcJ_G0010315	pseudogene	Chr1:134695179-134695547 (+)
C3H/HeJ	MGP_C3HHeJ_G0010248	pseudogene	Chr1:138469907-138470275 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010589	pseudogene	Chr1:144683574-144683942 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010218	pseudogene	Chr1:149691008-149691376 (+)
DBA/2J	MGP_DBA2J_G0010253	pseudogene	Chr1:133370431-133370799 (+)
FVB/NJ	MGP_FVBNJ_G0010276	pseudogene	Chr1:132015091-132015459 (+)
LP/J	MGP_LPJ_G0010337	pseudogene	Chr1:140888595-140888963 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010232	pseudogene	Chr1:155347175-155347543 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010551	pseudogene	Chr1:138141051-138141419 (+)
PWK/PhJ	MGP_PWKPhJ_G0009972	pseudogene	Chr1:132408767-132409135 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010140	pseudogene	Chr1:138176411-138176779 (+)

Homology

• Gene Tree
  Gm28883
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm28883
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000101482 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101482	Ensembl Gene Model | MGI Sequence Detail	369	C57BL/6J
transcript	ENSMUST00000189256	Ensembl | MGI Sequence Detail	369	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45