Gm28888 Gene Detail

Summary

• Symbol
  Gm28888
• Name
  predicted gene 28888

• Feature Type
  lncRNA gene
• IDs
  MGI:5579594
  NCBI Gene: 102636823
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:88387405-88393280 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  268 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579594	lncRNA gene	Chr1:88387405-88425016 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004898	lincRNA gene	Chr1:89884325-89890171 (+)
A/J	MGP_AJ_G0004880	lincRNA gene	Chr1:86652296-86658345 (+)
AKR/J	MGP_AKRJ_G0004858	lincRNA gene	Chr1:89208888-89214754 (+)
BALB/cJ	MGP_BALBcJ_G0004861	lincRNA gene	Chr1:86793731-86799527 (+)
C3H/HeJ	MGP_C3HHeJ_G0004810	lincRNA gene	Chr1:89432194-89439083 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005012	lincRNA gene	Chr1:93357141-93363001 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004436	lincRNA gene	Chr1:80954213-80960247 (+)
CAST/EiJ	MGP_CASTEiJ_G0004761	lincRNA gene	Chr1:88714395-88720210 (+)
CBA/J	MGP_CBAJ_G0004802	lincRNA gene	Chr1:96325395-96331306 (+)
DBA/2J	MGP_DBA2J_G0004821	lincRNA gene	Chr1:85885413-85891247 (+)
FVB/NJ	MGP_FVBNJ_G0004841	lincRNA gene	Chr1:84913061-84918915 (+)
LP/J	MGP_LPJ_G0004899	lincRNA gene	Chr1:91023865-91029719 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004826	lincRNA gene	Chr1:99697006-99702892 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005016	lincRNA gene	Chr1:89249781-89255625 (+)
PWK/PhJ	MGP_PWKPhJ_G0004714	lincRNA gene	Chr1:85274507-85280444 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004639	lincRNA gene	Chr1:88126146-88132308 (+)
WSB/EiJ	MGP_WSBEiJ_G0004806	lincRNA gene	Chr1:88940222-88947390 (+)

Homology

• Gene Tree
  Gm28888
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28888
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4

• Ensembl
  ENSMUSG00000100908 (Evidence)
• NCBI Gene
  102636823

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100908	Ensembl Gene Model | MGI Sequence Detail	5876	C57BL/6J
transcript	ENSMUST00000186556	Ensembl | MGI Sequence Detail	316	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9