Gm28935 Gene Detail

Summary

• Symbol
  Gm28935
• Name
  predicted gene 28935

• Feature Type
  lncRNA gene
• IDs
  MGI:5579641
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:11339614-11341382 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579641	lncRNA gene	Chr19:11339614-11341382 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005815	lincRNA gene	Chr19:8744018-8747344 (+)
A/J	MGP_AJ_G0005805	lincRNA gene	Chr19:8181781-8183394 (+)
AKR/J	MGP_AKRJ_G0005781	lincRNA gene	Chr19:8486553-8488251 (+)
BALB/cJ	MGP_BALBcJ_G0005784	lincRNA gene	Chr19:8217637-8219297 (+)
C3H/HeJ	MGP_C3HHeJ_G0005732	lincRNA gene	Chr19:8376970-8378582 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005944	lincRNA gene	Chr19:9144013-9145625 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005670	lincRNA gene	Chr19:7693466-7695166 (-)
CBA/J	MGP_CBAJ_G0005718	lincRNA gene	Chr19:9195315-9196927 (+)
DBA/2J	MGP_DBA2J_G0005737	lincRNA gene	Chr19:8173960-8175776 (+)
FVB/NJ	MGP_FVBNJ_G0005764	lincRNA gene	Chr19:8199072-8200768 (+)
LP/J	MGP_LPJ_G0005818	lincRNA gene	Chr19:8711741-8713353 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005750	lincRNA gene	Chr19:9086779-9089200 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005942	lincRNA gene	Chr19:8520928-8522540 (+)
PWK/PhJ	MGP_PWKPhJ_G0005617	lincRNA gene	Chr19:7618870-7621263 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0005724	lincRNA gene	Chr19:8415451-8417895 (+)

Homology

• Gene Tree
  Gm28935
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000100392 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100392	Ensembl Gene Model | MGI Sequence Detail	1769	C57BL/6J
transcript	ENSMUST00000185737	Ensembl | MGI Sequence Detail	724	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm28935:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155161	Chr19:11339637-11339652 (+)	31 bp