Gm28941 Gene Detail

Summary

• Symbol
  Gm28941
• Name
  predicted gene 28941

• Feature Type
  lncRNA gene
• IDs
  MGI:5579647
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:82717412-82718428 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579647	lncRNA gene	Chr1:82717412-82718428 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036867	sense intronic lncRNA gene	Chr1:83660793-83661809 (+)
A/J	MGP_AJ_G0036855	sense intronic lncRNA gene	Chr1:80692343-80693357 (+)
AKR/J	MGP_AKRJ_G0036804	sense intronic lncRNA gene	Chr1:82891026-82892024 (+)
BALB/cJ	MGP_BALBcJ_G0036846	sense intronic lncRNA gene	Chr1:80836052-80837068 (+)
C3H/HeJ	MGP_C3HHeJ_G0036531	sense intronic lncRNA gene	Chr1:83271735-83273669 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037359	sense intronic lncRNA gene	Chr1:86887269-86888285 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034421	sense intronic lncRNA gene	Chr1:75914965-75915931 (+)
CAST/EiJ	MGP_CASTEiJ_G0035721	sense intronic lncRNA gene	Chr1:82692559-82693583 (+)
CBA/J	MGP_CBAJ_G0036507	sense intronic lncRNA gene	Chr1:89674707-89675705 (+)
DBA/2J	MGP_DBA2J_G0036683	sense intronic lncRNA gene	Chr1:79981172-79982186 (+)
FVB/NJ	MGP_FVBNJ_G0036635	sense intronic lncRNA gene	Chr1:79076439-79077424 (+)
LP/J	MGP_LPJ_G0036730	sense intronic lncRNA gene	Chr1:84776303-84777920 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036640	sense intronic lncRNA gene	Chr1:93070445-93071443 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037475	sense intronic lncRNA gene	Chr1:83056474-83057490 (+)
PWK/PhJ	MGP_PWKPhJ_G0035414	sense intronic lncRNA gene	Chr1:79421893-79422964 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035229	sense intronic lncRNA gene	Chr1:82254921-82255909 (+)
WSB/EiJ	MGP_WSBEiJ_G0035923	sense intronic lncRNA gene	Chr1:82858295-82859280 (+)

Homology

• Gene Tree
  Gm28941
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28941
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101450 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101450	Ensembl Gene Model | MGI Sequence Detail	1017	C57BL/6J
transcript	ENSMUST00000185536	Ensembl | MGI Sequence Detail	1017	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45