Gm28975 Pseudogene Detail

Summary

• Symbol
  Gm28975
• Name
  predicted gene 28975

• Feature Type
  pseudogene
• IDs
  MGI:5579681
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrY:2061234-2061919 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome Y, Syntenic

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579681	pseudogene	ChrY:2061234-2061919 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040410	pseudogene	Chr5:129716660-129717342 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040396	pseudogene	Chr5:125619073-125619755 (-)
C3H/HeJ	MGP_C3HHeJ_G0040018	pseudogene	Chr5:128916537-128917219 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041008	pseudogene	Chr5:134731133-134731815 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037366	pseudogene	Chr5:118811803-118812486 (-)
CAST/EiJ	MGP_CASTEiJ_G0039083	pseudogene	Chr5:128068990-128069660 (-)
CBA/J	MGP_CBAJ_G0039983	pseudogene	Chr5:140012707-140013389 (-)
DBA/2J	MGP_DBA2J_G0040189	pseudogene	Chr5:124295654-124296336 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040229	pseudogene	Chr5:130240105-130240787 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040130	pseudogene	Chr5:143501409-143502091 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041085	pseudogene	Chr5:127931228-127931910 (-)
PWK/PhJ	MGP_PWKPhJ_G0038767	pseudogene	Chr5:123143405-123144087 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038475	pseudogene	Chr5:125576264-125576946 (-)
WSB/EiJ	MGP_WSBEiJ_G0039324	pseudogene	Chr5:128630872-128631554 (-)

Homology

• Gene Tree
  Gm28975
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000100576 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100576	Ensembl Gene Model | MGI Sequence Detail	686	C57BL/6J
transcript	ENSMUST00000186412	Ensembl | MGI Sequence Detail	686	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;