Gm28982 Gene Detail

Summary

• Symbol
  Gm28982
• Name
  predicted gene 28982

• Feature Type
  lncRNA gene
• IDs
  MGI:5579688
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:64656943-64665192 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  324 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579688	lncRNA gene	Chr1:64656943-64665192 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004857	lincRNA gene	Chr1:64795080-64803326 (+)
A/J	MGP_AJ_G0004838	lincRNA gene	Chr1:62513091-62521340 (+)
AKR/J	MGP_AKRJ_G0004816	lincRNA gene	Chr1:64260653-64268834 (+)
BALB/cJ	MGP_BALBcJ_G0004819	lincRNA gene	Chr1:62607699-62615944 (+)
C3H/HeJ	MGP_C3HHeJ_G0004768	lincRNA gene	Chr1:64539620-64547872 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004970	lincRNA gene	Chr1:67303463-67311706 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004397	lincRNA gene	Chr1:58568612-58576806 (+)
CAST/EiJ	MGP_CASTEiJ_G0004721	lincRNA gene	Chr1:63801242-63809457 (+)
CBA/J	MGP_CBAJ_G0004761	lincRNA gene	Chr1:69492424-69500655 (+)
DBA/2J	MGP_DBA2J_G0004779	lincRNA gene	Chr1:61918533-61926765 (+)
FVB/NJ	MGP_FVBNJ_G0004799	lincRNA gene	Chr1:61196191-61204442 (+)
LP/J	MGP_LPJ_G0004858	lincRNA gene	Chr1:65698026-65706276 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004783	lincRNA gene	Chr1:72357326-72365574 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004974	lincRNA gene	Chr1:64245427-64254016 (+)
PWK/PhJ	MGP_PWKPhJ_G0004674	lincRNA gene	Chr1:61302017-61310476 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004600	lincRNA gene	Chr1:63735267-63743096 (+)
WSB/EiJ	MGP_WSBEiJ_G0004766	lincRNA gene	Chr1:63951348-63959522 (+)

Homology

• Gene Tree
  Gm28982
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm28982
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101832 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101832	Ensembl Gene Model | MGI Sequence Detail	8250	C57BL/6J
transcript	ENSMUST00000186895	Ensembl | MGI Sequence Detail	512	Not Applicable

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45