Gm29009 Gene Detail

Summary

• Symbol
  Gm29009
• Name
  predicted gene 29009

• Feature Type
  lncRNA gene
• IDs
  MGI:5579715
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:126308713-126311551 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579715	lncRNA gene	Chr6:126308713-126311551 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007065	lincRNA gene	Chr6:129757036-129762051 (+)
A/J	MGP_AJ_G0007061	lincRNA gene	Chr6:124834632-124837537 (+)
AKR/J	MGP_AKRJ_G0007030	lincRNA gene	Chr6:128223658-128226419 (+)
BALB/cJ	MGP_BALBcJ_G0007036	lincRNA gene	Chr6:124414881-124420696 (+)
C3H/HeJ	MGP_C3HHeJ_G0006981	lincRNA gene	Chr6:128344432-128348647 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007202	lincRNA gene	Chr6:133149561-133153382 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006428	lincRNA gene	Chr6:122027485-122030297 (+)
CAST/EiJ	MGP_CASTEiJ_G0006892	lincRNA gene	Chr6:128533849-128537629 (+)
CBA/J	MGP_CBAJ_G0006961	lincRNA gene	Chr6:138273557-138276395 (+)
DBA/2J	MGP_DBA2J_G0006983	lincRNA gene	Chr6:123744001-123746627 (+)
FVB/NJ	MGP_FVBNJ_G0007007	lincRNA gene	Chr6:122663083-122665424 (+)
LP/J	MGP_LPJ_G0007068	lincRNA gene	Chr6:129886606-129893761 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006987	lincRNA gene	Chr6:142264309-142269305 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007207	lincRNA gene	Chr6:128169039-128171844 (+)
PWK/PhJ	MGP_PWKPhJ_G0006832	lincRNA gene	Chr6:121994446-121997510 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006742	lincRNA gene	Chr6:126230934-126235214 (+)
WSB/EiJ	MGP_WSBEiJ_G0006950	lincRNA gene	Chr6:128540747-128543055 (+)

Homology

• Gene Tree
  Gm29009
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101659 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101659	Ensembl Gene Model | MGI Sequence Detail	2839	C57BL/6J
transcript	ENSMUST00000186340	Ensembl | MGI Sequence Detail	496	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;