Gm29040 Gene Detail

Summary

• Symbol
  Gm29040
• Name
  predicted gene 29040

• Feature Type
  lncRNA gene
• IDs
  MGI:5579746
  NCBI Gene: 102632346
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:43287318-43300278 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  544 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579746	lncRNA gene	Chr1:43287318-43342085 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004818	lincRNA gene	Chr1:42219032-42276101 (-)
A/J	MGP_AJ_G0004799	lincRNA gene	Chr1:40954032-41006378 (-)
AKR/J	MGP_AKRJ_G0004778	lincRNA gene	Chr1:41487291-41543444 (-)
BALB/cJ	MGP_BALBcJ_G0004781	lincRNA gene	Chr1:40629505-40683912 (-)
C3H/HeJ	MGP_C3HHeJ_G0004729	lincRNA gene	Chr1:41874101-41929090 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004931	lincRNA gene	Chr1:43958468-44016301 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004363	lincRNA gene	Chr1:37784607-37839615 (-)
CAST/EiJ	MGP_CASTEiJ_G0004685	lincRNA gene	Chr1:41866860-41931219 (-)
CBA/J	MGP_CBAJ_G0004722	lincRNA gene	Chr1:45250376-45305704 (-)
DBA/2J	MGP_DBA2J_G0004740	lincRNA gene	Chr1:40229194-40282240 (-)
FVB/NJ	MGP_FVBNJ_G0004760	lincRNA gene	Chr1:39756242-39812673 (-)
LP/J	MGP_LPJ_G0004819	lincRNA gene	Chr1:42567331-42621812 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004745	lincRNA gene	Chr1:47232000-47290405 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004935	lincRNA gene	Chr1:41712697-41770061 (-)
PWK/PhJ	MGP_PWKPhJ_G0004637	lincRNA gene	Chr1:40115048-40170786 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004564	lincRNA gene	Chr1:41710859-41769712 (-)
WSB/EiJ	MGP_WSBEiJ_G0004727	lincRNA gene	Chr1:41749426-41805504 (-)

Homology

• Gene Tree
  Gm29040
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29040
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000099576 (Evidence)
• NCBI Gene
  102632346

Representative Sequences			Length	Strain/Species
genomic	102632346	NCBI Gene Model | MGI Sequence Detail	12961	C57BL/6J
transcript	AK144903	GenBank | ENA | DDBJ | MGI Sequence Detail	1193	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;