Gm29105 Pseudogene Detail

Summary

• Symbol
  Gm29105
• Name
  predicted gene 29105

• Feature Type
  pseudogene
• IDs
  MGI:5579811
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:131834903-131835692 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  73 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579811	pseudogene	Chr1:131834903-131835692 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039917	pseudogene	Chr1:135350173-135352573 (+)
A/J	MGP_AJ_G0039925	pseudogene	Chr1:130347454-130348241 (+)
AKR/J	MGP_AKRJ_G0039846	pseudogene	Chr1:134172194-134172986 (+)
BALB/cJ	MGP_BALBcJ_G0039902	pseudogene	Chr1:130666247-130667000 (+)
C3H/HeJ	MGP_C3HHeJ_G0039549	pseudogene	Chr1:134320620-134321410 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040475	pseudogene	Chr1:140396832-140397617 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037045	pseudogene	Chr1:123497025-123497810 (+)
CAST/EiJ	MGP_CASTEiJ_G0038659	pseudogene	Chr1:133313204-133314012 (+)
CBA/J	MGP_CBAJ_G0039517	pseudogene	Chr1:145171191-145173147 (+)
DBA/2J	MGP_DBA2J_G0039719	pseudogene	Chr1:129310109-129310862 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039754	pseudogene	Chr1:136669215-136670007 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039670	pseudogene	Chr1:150945720-150946454 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040568	pseudogene	Chr1:133931887-133934245 (+)
PWK/PhJ	MGP_PWKPhJ_G0038340	pseudogene	Chr1:128277210-128277950 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038071	pseudogene	Chr1:132881590-132882369 (+)
WSB/EiJ	MGP_WSBEiJ_G0038880	pseudogene	Chr1:133921160-133921940 (+)

Homology

• Gene Tree
  Gm29105
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  2
• Gene trapped
  3
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm29105
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000100026 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100026	Ensembl Gene Model | MGI Sequence Detail	790	C57BL/6J
transcript	ENSMUST00000187256	Ensembl | MGI Sequence Detail	450	Not Applicable

References

• Summaries
  All 8

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9