Gm29125 Gene Detail

Summary

• Symbol
  Gm29125
• Name
  predicted gene 29125

• Feature Type
  lncRNA gene
• IDs
  MGI:5579831
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:80360539-80363968 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579831	lncRNA gene	Chr1:80360539-80363968 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004888	lincRNA gene	Chr1:81199290-81202723 (+)
A/J	MGP_AJ_G0004870	lincRNA gene	Chr1:78335444-78338873 (+)
AKR/J	MGP_AKRJ_G0004848	lincRNA gene	Chr1:80480054-80483483 (+)
BALB/cJ	MGP_BALBcJ_G0004851	lincRNA gene	Chr1:78416558-78419987 (+)
C3H/HeJ	MGP_C3HHeJ_G0004800	lincRNA gene	Chr1:80831751-80835180 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005002	lincRNA gene	Chr1:84365308-84368737 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0004793	lincRNA gene	Chr1:87036070-87039494 (+)
DBA/2J	MGP_DBA2J_G0004811	lincRNA gene	Chr1:77640111-77643535 (+)
FVB/NJ	MGP_FVBNJ_G0004830	lincRNA gene	Chr1:76778765-76782195 (+)
LP/J	MGP_LPJ_G0004889	lincRNA gene	Chr1:82344917-82348350 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004815	lincRNA gene	Chr1:90322437-90325861 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005006	lincRNA gene	Chr1:80597883-80601319 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm29125
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29125
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000101722 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101722	Ensembl Gene Model | MGI Sequence Detail	3430	C57BL/6J
transcript	ENSMUST00000187121	Ensembl | MGI Sequence Detail	3220	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45