Gm29127 Pseudogene Detail

Summary

• Symbol
  Gm29127
• Name
  predicted gene 29127

• Feature Type
  pseudogene
• IDs
  MGI:5579833
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:138015681-138016197 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579833	pseudogene	Chr5:138015681-138016197 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013289	pseudogene	Chr5:142803624-142807138 (+)
A/J	MGP_AJ_G0013268	pseudogene	Chr5:136605632-136606131 (+)
AKR/J	MGP_AKRJ_G0011272	pseudogene	Chr17:10652997-10664561 (+)
BALB/cJ	MGP_BALBcJ_G0011284	pseudogene	Chr17:10555538-10556037 (+)
C3H/HeJ	MGP_C3HHeJ_G0013097	pseudogene	Chr5:141708310-141708809 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013616	pseudogene	Chr5:148147440-148154328 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011761	pseudogene	Chr5:130823471-130823970 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013065	pseudogene	Chr5:154013196-154013695 (+)
DBA/2J	MGP_DBA2J_G0013148	pseudogene	Chr5:136522190-136522689 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011296	pseudogene	Chr17:11164536-11165033 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013618	pseudogene	Chr5:140895993-140896495 (+)
PWK/PhJ	MGP_PWKPhJ_G0010868	pseudogene	Chr17:10315577-10316074 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010696	pseudogene	Chr17:10298263-10298759 (+)
WSB/EiJ	MGP_WSBEiJ_G0012856	pseudogene	Chr5:141614505-141615001 (+)

Homology

• Gene Tree
  Gm29127
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000100543 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100543	Ensembl Gene Model | MGI Sequence Detail	517	C57BL/6J
transcript	ENSMUST00000188304	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;