Gm29167 Pseudogene Detail

Summary

• Symbol
  Gm29167
• Name
  predicted gene 29167

• Feature Type
  pseudogene
• IDs
  MGI:5579873
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrY:1788576-1789167 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome Y, Syntenic

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579873	pseudogene	ChrY:1788576-1789167 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014485	pseudogene	ChrX:62573615-62574134 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0014424	pseudogene	ChrX:64457059-64457578 (+)
BALB/cJ	MGP_BALBcJ_G0014450	pseudogene	ChrX:62018497-62019021 (+)
C3H/HeJ	MGP_C3HHeJ_G0014281	pseudogene	ChrX:63050325-63050849 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014913	pseudogene	ChrX:64410270-64410789 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012689	pseudogene	ChrX:61998706-62001886 (+)
CAST/EiJ	MGP_CASTEiJ_G0013919	pseudogene	ChrX:48605908-48606434 (+)
CBA/J	MGP_CBAJ_G0014265	pseudogene	ChrX:66218257-66218776 (+)
DBA/2J	MGP_DBA2J_G0014348	pseudogene	ChrX:62251018-62251537 (+)
FVB/NJ	MGP_FVBNJ_G0014340	pseudogene	ChrX:61773827-61774346 (+)
LP/J	MGP_LPJ_G0014442	pseudogene	ChrX:63334546-63335065 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014378	pseudogene	ChrX:68340961-68341480 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014887	pseudogene	ChrX:62439204-62439728 (+)
PWK/PhJ	MGP_PWKPhJ_G0013723	pseudogene	ChrX:46822325-46822854 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013525	pseudogene	ChrX:49536436-49536950 (+)
WSB/EiJ	MGP_WSBEiJ_G0013991	pseudogene	ChrX:61823342-61823862 (+)

Homology

• Gene Tree
  Gm29167
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000101947 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101947	Ensembl Gene Model | MGI Sequence Detail	592	C57BL/6J
transcript	ENSMUST00000190024	Ensembl | MGI Sequence Detail	377	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;