Gm29188 Gene Detail

Summary

• Symbol
  Gm29188
• Name
  predicted gene 29188

• Feature Type
  lncRNA gene
• IDs
  MGI:5579894
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:150876791-150880328 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579894	lncRNA gene	Chr1:150876791-150880328 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004995	lincRNA gene	Chr1:155668935-155672479 (+)
A/J	MGP_AJ_G0004977	lincRNA gene	Chr1:149403911-149407452 (+)
AKR/J	MGP_AKRJ_G0004954	lincRNA gene	Chr1:153967188-153970719 (+)
BALB/cJ	MGP_BALBcJ_G0004958	lincRNA gene	Chr1:149937015-149940552 (+)
C3H/HeJ	MGP_C3HHeJ_G0004907	lincRNA gene	Chr1:154149884-154153425 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005108	lincRNA gene	Chr1:161080391-161083928 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004521	lincRNA gene	Chr1:141757056-141760641 (+)
CAST/EiJ	MGP_CASTEiJ_G0004855	lincRNA gene	Chr1:153556540-153560066 (+)
CBA/J	MGP_CBAJ_G0004898	lincRNA gene	Chr1:166753475-166757016 (+)
DBA/2J	MGP_DBA2J_G0004917	lincRNA gene	Chr1:148462510-148466051 (+)
FVB/NJ	MGP_FVBNJ_G0004937	lincRNA gene	Chr1:146915700-146919245 (+)
LP/J	MGP_LPJ_G0004994	lincRNA gene	Chr1:156708377-156711908 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004921	lincRNA gene	Chr1:174448235-174451776 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005113	lincRNA gene	Chr1:153776045-153779589 (+)
PWK/PhJ	MGP_PWKPhJ_G0004807	lincRNA gene	Chr1:147395661-147399199 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004733	lincRNA gene	Chr1:152603728-152607272 (+)
WSB/EiJ	MGP_WSBEiJ_G0004902	lincRNA gene	Chr1:153870802-153874343 (+)

Homology

• Gene Tree
  Gm29188
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm29188
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099622 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099622	Ensembl Gene Model | MGI Sequence Detail	3538	C57BL/6J
transcript	ENSMUST00000191173	Ensembl | MGI Sequence Detail	767	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;