Gm29242 Gene Detail

Summary

• Symbol
  Gm29242
• Name
  predicted gene 29242

• Feature Type
  lncRNA gene
• IDs
  MGI:5579948
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:45562462-45862976 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic

Strain
Comparison

• SNPs within 2kb
  425 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579948	lncRNA gene	ChrX:45562462-45862976 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007535	lincRNA gene	ChrX:41593311-41896851 (-)
A/J	MGP_AJ_G0007532	lincRNA gene	ChrX:41463524-41769036 (-)
AKR/J	MGP_AKRJ_G0007503	lincRNA gene	ChrX:42556094-42870222 (-)
BALB/cJ	MGP_BALBcJ_G0007509	lincRNA gene	ChrX:41180832-41470460 (-)
C3H/HeJ	MGP_C3HHeJ_G0007454	lincRNA gene	ChrX:41878618-42199918 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007680	lincRNA gene	ChrX:42575842-42882598 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006860	lincRNA gene	ChrX:39262863-39549099 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0007435	lincRNA gene	ChrX:43761314-44079035 (-)
DBA/2J	MGP_DBA2J_G0007461	lincRNA gene	ChrX:41302223-41603031 (-)
FVB/NJ	MGP_FVBNJ_G0007477	lincRNA gene	ChrX:41069541-41371855 (-)
LP/J	MGP_LPJ_G0007541	lincRNA gene	ChrX:41892663-42211613 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007458	lincRNA gene	ChrX:45053440-45416663 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007685	lincRNA gene	ChrX:41516591-41818632 (-)
PWK/PhJ	MGP_PWKPhJ_G0007298	lincRNA gene	ChrX:29056296-29351901 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0007203	lincRNA gene	ChrX:30241004-30554205 (-)
WSB/EiJ	MGP_WSBEiJ_G0007417	lincRNA gene	ChrX:41144318-41456589 (-)

Homology

• Gene Tree
  Gm29242
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000101233 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101233	Ensembl Gene Model | MGI Sequence Detail	300515	C57BL/6J
transcript	ENSMUST00000186570	Ensembl | MGI Sequence Detail	457	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;