Gm29290 Gene Detail

Summary

• Symbol
  Gm29290
• Name
  predicted gene 29290

• Feature Type
  lncRNA gene
• IDs
  MGI:5579996
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:153814972-153817036 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579996	lncRNA gene	Chr1:153814972-153817036 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004999	lincRNA gene	Chr1:158803215-158805279 (+)
A/J	MGP_AJ_G0004981	lincRNA gene	Chr1:152398660-152400724 (+)
AKR/J	MGP_AKRJ_G0004959	lincRNA gene	Chr1:157121663-157123727 (+)
BALB/cJ	MGP_BALBcJ_G0004963	lincRNA gene	Chr1:152949496-152951560 (+)
C3H/HeJ	MGP_C3HHeJ_G0004911	lincRNA gene	Chr1:157234171-157236235 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005113	lincRNA gene	Chr1:164294245-164296309 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0004902	lincRNA gene	Chr1:170089101-170091165 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0004942	lincRNA gene	Chr1:149874858-149877489 (+)
LP/J	MGP_LPJ_G0004999	lincRNA gene	Chr1:159953324-159956871 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004926	lincRNA gene	Chr1:177701294-177703358 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005118	lincRNA gene	Chr1:156899838-156901902 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm29290
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm29290
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000100014 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100014	Ensembl Gene Model | MGI Sequence Detail	2065	C57BL/6J
transcript	ENSMUST00000185385	Ensembl | MGI Sequence Detail	597	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;