Gm29296 Gene Detail

Summary

• Symbol
  Gm29296
• Name
  predicted gene 29296

• Feature Type
  lncRNA gene
• IDs
  MGI:5580002
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:51400544-51422474 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  818 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580002	lncRNA gene	Chr7:51400544-51422474 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0007175	lincRNA gene	Chr7:52506144-52528604 (-)
A/J	MGP_AJ_G0007171	lincRNA gene	Chr7:51681596-51703516 (-)
AKR/J	MGP_AKRJ_G0007141	lincRNA gene	Chr7:52900835-52922741 (-)
BALB/cJ	MGP_BALBcJ_G0007150	lincRNA gene	Chr7:51334242-51356163 (-)
C3H/HeJ	MGP_C3HHeJ_G0007093	lincRNA gene	Chr7:53308742-53330674 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007319	lincRNA gene	Chr7:54872804-54894730 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006531	lincRNA gene	Chr7:54710851-54732838 (-)
CAST/EiJ	MGP_CASTEiJ_G0006997	lincRNA gene	Chr7:44623751-44645646 (-)
CBA/J	MGP_CBAJ_G0007076	lincRNA gene	Chr7:56739014-56761224 (-)
DBA/2J	MGP_DBA2J_G0007097	lincRNA gene	Chr7:50864785-50886700 (-)
FVB/NJ	MGP_FVBNJ_G0007120	lincRNA gene	Chr7:50787138-50809390 (-)
LP/J	MGP_LPJ_G0007179	lincRNA gene	Chr7:53461878-53484563 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007098	lincRNA gene	Chr7:55823991-55845922 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007322	lincRNA gene	Chr7:51869727-51891650 (-)
PWK/PhJ	MGP_PWKPhJ_G0006938	lincRNA gene	Chr7:44171646-44198839 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006848	lincRNA gene	Chr7:40039152-40064903 (-)
WSB/EiJ	MGP_WSBEiJ_G0007057	lincRNA gene	Chr7:52572602-52594523 (-)

Homology

• Gene Tree
  Gm29296
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000102124 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102124	Ensembl Gene Model | MGI Sequence Detail	21931	C57BL/6J
transcript	ENSMUST00000188146	Ensembl | MGI Sequence Detail	320	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29296:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr72646	Chr7:51422496-51422518 (-)	-33 bp