Gm29336 Gene Detail

Summary

• Symbol
  Gm29336
• Name
  predicted gene 29336

• Feature Type
  lncRNA gene
• IDs
  MGI:5580042
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:88584030-88585822 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580042	lncRNA gene	Chr1:88584030-88585822 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004900	lincRNA gene	Chr1:90088525-90092385 (+)
A/J	MGP_AJ_G0004882	lincRNA gene	Chr1:86856985-86858769 (+)
AKR/J	MGP_AKRJ_G0004860	lincRNA gene	Chr1:89423794-89425578 (+)
BALB/cJ	MGP_BALBcJ_G0004863	lincRNA gene	Chr1:86992450-86994242 (+)
C3H/HeJ	MGP_C3HHeJ_G0004812	lincRNA gene	Chr1:89631090-89632883 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005014	lincRNA gene	Chr1:93579526-93581318 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004438	lincRNA gene	Chr1:81144669-81146513 (+)
CAST/EiJ	MGP_CASTEiJ_G0004763	lincRNA gene	Chr1:88923282-88925070 (+)
CBA/J	MGP_CBAJ_G0004804	lincRNA gene	Chr1:96553052-96554845 (+)
DBA/2J	MGP_DBA2J_G0004823	lincRNA gene	Chr1:86081971-86083754 (+)
FVB/NJ	MGP_FVBNJ_G0004843	lincRNA gene	Chr1:85111166-85112950 (+)
LP/J	MGP_LPJ_G0004901	lincRNA gene	Chr1:91233473-91235257 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004828	lincRNA gene	Chr1:99920645-99922463 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005018	lincRNA gene	Chr1:89452973-89454757 (+)
PWK/PhJ	MGP_PWKPhJ_G0004716	lincRNA gene	Chr1:85469922-85471681 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004641	lincRNA gene	Chr1:88327495-88329294 (+)
WSB/EiJ	MGP_WSBEiJ_G0004808	lincRNA gene	Chr1:89148706-89150498 (+)

Homology

• Gene Tree
  Gm29336
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29336
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100367 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100367	Ensembl Gene Model | MGI Sequence Detail	1793	C57BL/6J
transcript	ENSMUST00000186042	Ensembl | MGI Sequence Detail	573	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45