Gm29361 Gene Detail

Summary

• Symbol
  Gm29361
• Name
  predicted gene 29361

• Feature Type
  lncRNA gene
• IDs
  MGI:5580067
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:83678608-83680607 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580067	lncRNA gene	Chr12:83678608-83680607 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003151	antisense lncRNA gene	Chr12:84278509-84281380 (-)
A/J	MGP_AJ_G0003128	antisense lncRNA gene	Chr12:81085565-81087562 (-)
AKR/J	MGP_AKRJ_G0003108	antisense lncRNA gene	Chr12:83277676-83285684 (-)
BALB/cJ	MGP_BALBcJ_G0003115	antisense lncRNA gene	Chr12:81433892-81435776 (-)
C3H/HeJ	MGP_C3HHeJ_G0003071	antisense lncRNA gene	Chr12:83744127-83749860 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003258	antisense lncRNA gene	Chr12:86696476-86698469 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0003040	antisense lncRNA gene	Chr12:78676666-78679831 (-)
CBA/J	MGP_CBAJ_G0003068	antisense lncRNA gene	Chr12:90026920-90034466 (-)
DBA/2J	MGP_DBA2J_G0003073	antisense lncRNA gene	Chr12:80632128-80634435 (-)
FVB/NJ	MGP_FVBNJ_G0003093	antisense lncRNA gene	Chr12:79579561-79581537 (-)
LP/J	MGP_LPJ_G0003148	antisense lncRNA gene	Chr12:84152305-84155480 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003082	antisense lncRNA gene	Chr12:92993858-92995822 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003262	antisense lncRNA gene	Chr12:82875210-82877956 (-)
PWK/PhJ	MGP_PWKPhJ_G0002998	antisense lncRNA gene	Chr12:75103128-75105413 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002942	antisense lncRNA gene	Chr12:77337285-77341697 (-)
WSB/EiJ	MGP_WSBEiJ_G0003071	antisense lncRNA gene	Chr12:83540293-83544298 (-)

Homology

• Gene Tree
  Gm29361
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  3
• Genomic Mutations
  1 involving Gm29361
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000099708 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099708	Ensembl Gene Model | MGI Sequence Detail	2000	C57BL/6J
transcript	ENSMUST00000183323	Ensembl | MGI Sequence Detail	2000	Not Applicable

References

• Summaries
  All 5

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm29361:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116966	Chr12:83679279-83679305 (-)	1,315 bp
Tssr116965	Chr12:83678777-83678815 (-)	1,811 bp