Gm29388 Gene Detail

Summary

• Symbol
  Gm29388
• Name
  predicted gene 29388

• Feature Type
  lncRNA gene
• IDs
  MGI:5580094
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:102028441-102030916 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580094	lncRNA gene	Chr9:102028441-102030916 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037095	sense intronic lncRNA gene	Chr9:103705938-103708415 (-)
A/J	MGP_AJ_G0037082	sense intronic lncRNA gene	Chr9:99984590-99987067 (-)
AKR/J	MGP_AKRJ_G0037030	sense intronic lncRNA gene	Chr9:102456572-102459049 (-)
BALB/cJ	MGP_BALBcJ_G0037073	sense intronic lncRNA gene	Chr9:99696078-99698555 (-)
C3H/HeJ	MGP_C3HHeJ_G0036760	sense intronic lncRNA gene	Chr9:102868611-102871088 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037586	sense intronic lncRNA gene	Chr9:106607855-106610330 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034630	sense intronic lncRNA gene	Chr9:97588954-97591504 (-)
CAST/EiJ	MGP_CASTEiJ_G0035947	sense intronic lncRNA gene	Chr9:102668137-102670610 (-)
CBA/J	MGP_CBAJ_G0036735	sense intronic lncRNA gene	Chr9:110340743-110343220 (-)
DBA/2J	MGP_DBA2J_G0036910	sense intronic lncRNA gene	Chr9:99485737-99488214 (-)
FVB/NJ	MGP_FVBNJ_G0036860	sense intronic lncRNA gene	Chr9:98282360-98284841 (-)
LP/J	MGP_LPJ_G0036958	sense intronic lncRNA gene	Chr9:103908030-103910501 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036868	sense intronic lncRNA gene	Chr9:112182725-112185204 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037704	sense intronic lncRNA gene	Chr9:102702129-102704604 (-)
PWK/PhJ	MGP_PWKPhJ_G0035641	sense intronic lncRNA gene	Chr9:99720178-99722678 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035449	sense intronic lncRNA gene	Chr9:102741291-102743789 (-)
WSB/EiJ	MGP_WSBEiJ_G0036149	sense intronic lncRNA gene	Chr9:102580246-102582723 (-)

Homology

• Gene Tree
  Gm29388
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29388
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101648 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101648	Ensembl Gene Model | MGI Sequence Detail	2476	C57BL/6J
transcript	ENSMUST00000190718	Ensembl | MGI Sequence Detail	284	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;