Gm29396 Pseudogene Detail

Summary

• Symbol
  Gm29396
• Name
  predicted gene 29396

• Feature Type
  pseudogene
• IDs
  MGI:5580102
  NCBI Gene: 115487214
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:92573996-92574809 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580102	pseudogene	Chr9:92573996-92574957 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014215	pseudogene	Chr9:93745685-93746498 (+)
A/J	MGP_AJ_G0014232	pseudogene	Chr9:90494159-90494972 (+)
AKR/J	MGP_AKRJ_G0014158	pseudogene	Chr9:92622635-92623448 (+)
BALB/cJ	MGP_BALBcJ_G0014182	pseudogene	Chr9:90141271-90142084 (+)
C3H/HeJ	MGP_C3HHeJ_G0014014	pseudogene	Chr9:93079911-93080724 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014632	pseudogene	Chr9:96371936-96372749 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013668	pseudogene	Chr9:92811539-92812287 (+)
CBA/J	MGP_CBAJ_G0013996	pseudogene	Chr9:99717550-99718363 (+)
DBA/2J	MGP_DBA2J_G0014080	pseudogene	Chr9:90011740-90012553 (+)
FVB/NJ	MGP_FVBNJ_G0014077	pseudogene	Chr9:88963395-88964210 (+)
LP/J	MGP_LPJ_G0014165	pseudogene	Chr9:93944562-93945375 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014112	pseudogene	Chr9:101669972-101670785 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014603	pseudogene	Chr9:92861462-92862241 (+)
PWK/PhJ	MGP_PWKPhJ_G0013482	pseudogene	Chr9:90168867-90169634 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013271	pseudogene	Chr9:92932074-92932865 (+)
WSB/EiJ	MGP_WSBEiJ_G0013727	pseudogene	Chr9:92747876-92748703 (+)

Homology

• Gene Tree
  Gm29396
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29396
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101822 (Evidence)
• NCBI Gene
  115487214

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101822	Ensembl Gene Model | MGI Sequence Detail	814	C57BL/6J
transcript	ENSMUST00000185659	Ensembl | MGI Sequence Detail	716	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29396:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86523	Chr9:92573968-92573972 (+)	-26 bp