Gm29397 Pseudogene Detail

Summary

• Symbol
  Gm29397
• Name
  predicted gene 29397

• Feature Type
  pseudogene
• IDs
  MGI:5580103
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:92858279-92858611 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580103	pseudogene	Chr9:92858279-92858611 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014216	pseudogene	Chr9:94034999-94035305 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0014633	pseudogene	Chr9:96681801-96682133 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014166	pseudogene	Chr9:94253175-94253481 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013728	pseudogene	Chr9:93047400-93047706 (+)

Homology

• Gene Tree
  Gm29397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29397
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  7

• Ensembl
  ENSMUSG00000101309 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101309	Ensembl Gene Model | MGI Sequence Detail	333	C57BL/6J
transcript	ENSMUST00000185205	Ensembl | MGI Sequence Detail	333	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;