Rpap3-ps1 Pseudogene Detail

Summary

• Symbol
  Rpap3-ps1
• Name
  RNA polymerase II associated protein 3, pseudogene 1
• Synonyms
  Gm29419

• Feature Type
  pseudogene
• IDs
  MGI:5580125
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:13920553-13921006 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580125	pseudogene	Chr7:13920553-13921006 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013817	pseudogene	Chr7:11691686-11692139 (-)
A/J	MGP_AJ_G0013814	pseudogene	Chr7:11434729-11435182 (-)
AKR/J	MGP_AKRJ_G0013762	pseudogene	Chr7:11775925-11776378 (-)
BALB/cJ	MGP_BALBcJ_G0013798	pseudogene	Chr7:11619836-11620289 (-)
C3H/HeJ	MGP_C3HHeJ_G0013619	pseudogene	Chr7:11948754-11949207 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014192	pseudogene	Chr7:12296256-12296709 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013299	pseudogene	Chr7:9152405-9152858 (-)
CBA/J	MGP_CBAJ_G0013600	pseudogene	Chr7:12562245-12562698 (-)
DBA/2J	MGP_DBA2J_G0013678	pseudogene	Chr7:11395031-11395484 (-)
FVB/NJ	MGP_FVBNJ_G0013673	pseudogene	Chr7:11358621-11359074 (-)
LP/J	MGP_LPJ_G0013759	pseudogene	Chr7:11755973-11756426 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013692	pseudogene	Chr7:12744999-12745452 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014170	pseudogene	Chr7:11534177-11534630 (-)
PWK/PhJ	MGP_PWKPhJ_G0013111	pseudogene	Chr7:9587340-9592099 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012890	pseudogene	Chr7:7233595-7255909 (-)
WSB/EiJ	MGP_WSBEiJ_G0013360	pseudogene	Chr7:11597016-11597469 (-)

Homology

• Gene Tree
  Rpap3-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000100378 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100378	Ensembl Gene Model | MGI Sequence Detail	454	C57BL/6J
transcript	ENSMUST00000190928	Ensembl | MGI Sequence Detail	454	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;