Gm29428 Pseudogene Detail

Summary

• Symbol
  Gm29428
• Name
  predicted gene 29428

• Feature Type
  pseudogene
• IDs
  MGI:5580134
  NCBI Gene: 102640122
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:130123717-130124125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580134	pseudogene	Chr1:130123044-130125259 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010342	pseudogene	Chr1:133517297-133517705 (+)
A/J	MGP_AJ_G0010331	pseudogene	Chr1:128538559-128538967 (+)
AKR/J	MGP_AKRJ_G0010301	pseudogene	Chr1:132360589-132360997 (+)
BALB/cJ	MGP_BALBcJ_G0010307	pseudogene	Chr1:128921673-128922081 (+)
C3H/HeJ	MGP_C3HHeJ_G0010242	pseudogene	Chr1:132505413-132505821 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010582	pseudogene	Chr1:138494682-138495090 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009269	pseudogene	Chr1:121779783-121780199 (+)
CAST/EiJ	MGP_CASTEiJ_G0010065	pseudogene	Chr1:131533840-131534258 (+)
CBA/J	MGP_CBAJ_G0010211	pseudogene	Chr1:143240292-143240700 (+)
DBA/2J	MGP_DBA2J_G0010244	pseudogene	Chr1:127554948-127555356 (+)
FVB/NJ	MGP_FVBNJ_G0010268	pseudogene	Chr1:126248537-126248945 (+)
LP/J	MGP_LPJ_G0010328	pseudogene	Chr1:134879914-134880322 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010224	pseudogene	Chr1:149069168-149069576 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010544	pseudogene	Chr1:132132848-132134192 (+)
PWK/PhJ	MGP_PWKPhJ_G0009967	pseudogene	Chr1:126538732-126539148 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010132	pseudogene	Chr1:132097131-132097539 (+)

Homology

• Gene Tree
  Gm29428
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm29428
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000100623 (Evidence)
• NCBI Gene
  102640122

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100623	Ensembl Gene Model | MGI Sequence Detail	409	C57BL/6J
transcript	ENSMUST00000190086	Ensembl | MGI Sequence Detail	409	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45