Gm29430 Gene Detail

Summary

• Symbol
  Gm29430
• Name
  predicted gene 29430

• Feature Type
  lncRNA gene
• IDs
  MGI:5580136
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:52160090-52166905 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  190 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580136	lncRNA gene	Chr6:52160090-52166905 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004272	antisense lncRNA gene	Chr6:51420560-51428694 (+)
A/J	MGP_AJ_G0004250	antisense lncRNA gene	Chr6:49018722-49025528 (+)
AKR/J	MGP_AKRJ_G0004231	antisense lncRNA gene	Chr6:50725641-50732410 (+)
BALB/cJ	MGP_BALBcJ_G0004237	antisense lncRNA gene	Chr6:49377940-49384965 (+)
C3H/HeJ	MGP_C3HHeJ_G0004185	antisense lncRNA gene	Chr6:50733378-50740168 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004386	antisense lncRNA gene	Chr6:52557379-52566276 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003859	antisense lncRNA gene	Chr6:46666721-46673454 (+)
CAST/EiJ	MGP_CASTEiJ_G0004147	antisense lncRNA gene	Chr6:50546467-50553375 (+)
CBA/J	MGP_CBAJ_G0004179	antisense lncRNA gene	Chr6:54757592-54764479 (+)
DBA/2J	MGP_DBA2J_G0004195	antisense lncRNA gene	Chr6:48941475-48948276 (+)
FVB/NJ	MGP_FVBNJ_G0004211	antisense lncRNA gene	Chr6:48551369-48558345 (+)
LP/J	MGP_LPJ_G0004273	antisense lncRNA gene	Chr6:51403134-51409929 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004201	antisense lncRNA gene	Chr6:57388369-57395179 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004383	antisense lncRNA gene	Chr6:50652318-50660248 (+)
PWK/PhJ	MGP_PWKPhJ_G0004100	antisense lncRNA gene	Chr6:48564132-48571394 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004044	antisense lncRNA gene	Chr6:49987958-49994775 (+)
WSB/EiJ	MGP_WSBEiJ_G0004183	antisense lncRNA gene	Chr6:50667636-50675648 (+)

Homology

• Gene Tree
  Gm29430
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm29430
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000101451 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101451	Ensembl Gene Model | MGI Sequence Detail	6816	C57BL/6J
transcript	ENSMUST00000191453	Ensembl | MGI Sequence Detail	2015	Not Applicable

References

• Summaries
  All 10

  Phenotypes 8
• Earliest
  J:99350 Kmita M, et al., Early developmental arrest of mammalian limbs lacking HoxA/HoxD gene function. Nature. 2005 Jun 23;435(7045):1113-6
• Latest
  J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018