Gm29443 Gene Detail

Summary

• Symbol
  Gm29443
• Name
  predicted gene 29443

• Feature Type
  lncRNA gene
• IDs
  MGI:5580149
  NCBI Gene: 102634559
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:16347749-16366568 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  620 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580149	lncRNA gene	Chr7:16347749-16366568 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004409	antisense lncRNA gene	Chr7:14336129-14354948 (+)
A/J	MGP_AJ_G0004386	antisense lncRNA gene	Chr7:14086971-14105762 (+)
AKR/J	MGP_AKRJ_G0004368	antisense lncRNA gene	Chr7:14410402-14431656 (+)
BALB/cJ	MGP_BALBcJ_G0004372	antisense lncRNA gene	Chr7:14198941-14218484 (+)
C3H/HeJ	MGP_C3HHeJ_G0004321	antisense lncRNA gene	Chr7:14599046-14619836 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004521	antisense lncRNA gene	Chr7:15090995-15112281 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004281	antisense lncRNA gene	Chr7:11356611-11378766 (+)
CBA/J	MGP_CBAJ_G0004315	antisense lncRNA gene	Chr7:15556026-15581855 (+)
DBA/2J	MGP_DBA2J_G0004330	antisense lncRNA gene	Chr7:13977302-13996096 (+)
FVB/NJ	MGP_FVBNJ_G0004348	antisense lncRNA gene	Chr7:13881674-13901345 (+)
LP/J	MGP_LPJ_G0004410	antisense lncRNA gene	Chr7:14584021-14609277 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004339	antisense lncRNA gene	Chr7:15500682-15520784 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004520	antisense lncRNA gene	Chr7:14189840-14209804 (+)
PWK/PhJ	MGP_PWKPhJ_G0004234	antisense lncRNA gene	Chr7:11502371-11520808 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004320	antisense lncRNA gene	Chr7:14248062-14271009 (+)

Homology

• Gene Tree
  Gm29443
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000100583 (Evidence)
• NCBI Gene
  102634559

Representative Sequences			Length	Strain/Species
genomic	102634559	NCBI Gene Model | MGI Sequence Detail	18820	C57BL/6J
transcript	NR_136928	RefSeq | MGI Sequence Detail	509	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9