Gm29481 Gene Detail

Summary

• Symbol
  Gm29481
• Name
  predicted gene 29481

• Feature Type
  lncRNA gene
• IDs
  MGI:5580187
  NCBI Gene: 115487108
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:92748680-92765618 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  434 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580187	lncRNA gene	Chr1:92722787-92765618 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002719	antisense lncRNA gene	Chr1:94420506-94437433 (-)
A/J	MGP_AJ_G0002695	antisense lncRNA gene	Chr1:91039146-91056083 (-)
AKR/J	MGP_AKRJ_G0002676	antisense lncRNA gene	Chr1:93728558-93746338 (-)
BALB/cJ	MGP_BALBcJ_G0002682	antisense lncRNA gene	Chr1:91203912-91221343 (-)
C3H/HeJ	MGP_C3HHeJ_G0002641	antisense lncRNA gene	Chr1:93980062-93997008 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002825	antisense lncRNA gene	Chr1:98018931-98037255 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002373	antisense lncRNA gene	Chr1:85289122-85306185 (-)
CAST/EiJ	MGP_CASTEiJ_G0002613	antisense lncRNA gene	Chr1:93292047-93310346 (-)
CBA/J	MGP_CBAJ_G0002636	antisense lncRNA gene	Chr1:101191772-101208718 (-)
DBA/2J	MGP_DBA2J_G0002642	antisense lncRNA gene	Chr1:90237341-90254269 (-)
FVB/NJ	MGP_FVBNJ_G0002662	antisense lncRNA gene	Chr1:89296967-89314209 (-)
LP/J	MGP_LPJ_G0002721	antisense lncRNA gene	Chr1:95608283-95625222 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002652	antisense lncRNA gene	Chr1:104322600-104339300 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002830	antisense lncRNA gene	Chr1:93745922-93762855 (-)
PWK/PhJ	MGP_PWKPhJ_G0002571	antisense lncRNA gene	Chr1:89665376-89682492 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0002643	antisense lncRNA gene	Chr1:93553519-93570458 (-)

Homology

• Gene Tree
  Gm29481
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm29481
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100781 (Evidence)
• NCBI Gene
  115487108

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100781	Ensembl Gene Model | MGI Sequence Detail	16939	C57BL/6J
transcript	ENSMUST00000189080	Ensembl | MGI Sequence Detail	1049	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm29481:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12980	Chr1:92765605-92765623 (-)	4 bp