Gm29506 Gene Detail

Summary

• Symbol
  Gm29506
• Name
  predicted gene 29506

• Feature Type
  lncRNA gene
• IDs
  MGI:5580212
  NCBI Gene: 102632273
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:23267574-23274739 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  262 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580212	lncRNA gene	Chr1:23087376-23274754 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037099	sense overlapping lncRNA gene	Chr1:20808486-21011419 (-)
A/J	MGP_AJ_G0037086	sense overlapping lncRNA gene	Chr1:20449691-20639090 (-)
AKR/J	MGP_AKRJ_G0037034	sense overlapping lncRNA gene	Chr1:20603588-20797530 (-)
BALB/cJ	MGP_BALBcJ_G0037077	sense overlapping lncRNA gene	Chr1:20183064-20367670 (-)
C3H/HeJ	MGP_C3HHeJ_G0036764	sense overlapping lncRNA gene	Chr1:20629398-20821665 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037591	sense overlapping lncRNA gene	Chr1:21766501-21973809 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034634	sense overlapping lncRNA gene	Chr1:18574444-18760603 (-)
CAST/EiJ	MGP_CASTEiJ_G0035951	sense overlapping lncRNA gene	Chr1:20744092-20951040 (-)
CBA/J	MGP_CBAJ_G0036739	sense overlapping lncRNA gene	Chr1:22309859-22523184 (-)
DBA/2J	MGP_DBA2J_G0036914	sense overlapping lncRNA gene	Chr1:19946038-20134597 (-)
FVB/NJ	MGP_FVBNJ_G0036864	sense overlapping lncRNA gene	Chr1:19728840-19917005 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0036872	sense overlapping lncRNA gene	Chr1:23300535-23520163 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037708	sense overlapping lncRNA gene	Chr1:20567052-20765831 (-)
PWK/PhJ	MGP_PWKPhJ_G0035645	sense overlapping lncRNA gene	Chr1:19706723-19899111 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035453	sense overlapping lncRNA gene	Chr1:20633239-20845660 (-)
WSB/EiJ	MGP_WSBEiJ_G0036153	sense overlapping lncRNA gene	Chr1:20495360-20691595 (-)

Homology

• Gene Tree
  Gm29506
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29506
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000101227 (Evidence)
• NCBI Gene
  102632273

Representative Sequences			Length	Strain/Species
genomic	102632273	NCBI Gene Model | MGI Sequence Detail	7166	C57BL/6J
transcript	AK046640	GenBank | ENA | DDBJ | MGI Sequence Detail	2079	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;