Gm29594 Gene Detail

Summary

• Symbol
  Gm29594
• Name
  predicted gene 29594

• Feature Type
  lncRNA gene
• IDs
  MGI:5580300
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:45306332-45306868 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580300	lncRNA gene	Chr19:45306332-45306868 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005837	lincRNA gene	Chr19:44904792-44905329 (+)
A/J	MGP_AJ_G0005829	lincRNA gene	Chr19:42711272-42711809 (+)
AKR/J	MGP_AKRJ_G0005804	lincRNA gene	Chr19:44087467-44088003 (+)
BALB/cJ	MGP_BALBcJ_G0005808	lincRNA gene	Chr19:42763297-42763834 (+)
C3H/HeJ	MGP_C3HHeJ_G0005755	lincRNA gene	Chr19:44273593-44274119 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005968	lincRNA gene	Chr19:46025152-46025688 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005308	lincRNA gene	Chr19:41970892-41971431 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0005740	lincRNA gene	Chr19:48341384-48341921 (+)
DBA/2J	MGP_DBA2J_G0005761	lincRNA gene	Chr19:42529315-42529852 (+)
FVB/NJ	MGP_FVBNJ_G0005787	lincRNA gene	Chr19:42308243-42308780 (+)
LP/J	MGP_LPJ_G0005841	lincRNA gene	Chr19:44826715-44827235 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005774	lincRNA gene	Chr19:47674206-47674742 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005965	lincRNA gene	Chr19:44165893-44166430 (+)
PWK/PhJ	MGP_PWKPhJ_G0005641	lincRNA gene	Chr19:42442594-42443176 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005554	lincRNA gene	Chr19:42845629-42846239 (+)
WSB/EiJ	MGP_WSBEiJ_G0005746	lincRNA gene	Chr19:44325241-44325776 (+)

Homology

• Gene Tree
  Gm29594
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000102057 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102057	Ensembl Gene Model | MGI Sequence Detail	537	C57BL/6J
transcript	ENSMUST00000191181	Ensembl | MGI Sequence Detail	398	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;