Gm29627 Pseudogene Detail

Summary

• Symbol
  Gm29627
• Name
  predicted gene 29627

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5580333
  NCBI Gene: 102635284
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:31466377-31466839 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580333	pseudogene	Chr7:31466377-31466844 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0013813	pseudogene	Chr7:32581866-32582322 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013670	pseudogene	Chr7:33554469-33554925 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014241	pseudogene	Chr7:32025809-32026271 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013722	pseudogene	Chr7:31716143-31716599 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013746	pseudogene	Chr7:34435576-34436032 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0013150	pseudogene	Chr7:25282414-25282876 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm29627
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  2

• Ensembl
  ENSMUSG00000100517 (Evidence)
• NCBI Gene
  102635284

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100517	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000187984	Ensembl | MGI Sequence Detail	463	Not Applicable
polypeptide	XP_036009519	RefSeq | MGI Sequence Detail	155	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;