Gm29778 Pseudogene Detail

Summary

• Symbol
  Gm29778
• Name
  predicted gene, 29778

• Feature Type
  pseudogene
• IDs
  MGI:5588937
  NCBI Gene: 101056097
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:147262679-147263144 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588937	pseudogene	Chr5:147262679-147263180 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013322	pseudogene	Chr5:152975911-152976376 (-)
A/J	MGP_AJ_G0013304	pseudogene	Chr5:146495044-146495509 (-)
AKR/J	MGP_AKRJ_G0013266	pseudogene	Chr5:150996886-150997351 (-)
BALB/cJ	MGP_BALBcJ_G0013282	pseudogene	Chr5:147709643-147710108 (-)
C3H/HeJ	MGP_C3HHeJ_G0013129	pseudogene	Chr5:151961376-151961841 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013650	pseudogene	Chr5:158574404-158574869 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011784	pseudogene	Chr5:140910617-140911062 (-)
CAST/EiJ	MGP_CASTEiJ_G0012849	pseudogene	Chr5:151522898-151523362 (-)
CBA/J	MGP_CBAJ_G0013098	pseudogene	Chr5:165206964-165207429 (-)
DBA/2J	MGP_DBA2J_G0013183	pseudogene	Chr5:146178519-146178984 (-)
FVB/NJ	MGP_FVBNJ_G0013180	pseudogene	Chr5:145380178-145380643 (-)
LP/J	MGP_LPJ_G0013252	pseudogene	Chr5:153674218-153674683 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013199	pseudogene	Chr5:167460606-167461071 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013653	pseudogene	Chr5:150905146-150905611 (-)
PWK/PhJ	MGP_PWKPhJ_G0012663	pseudogene	Chr5:145267742-145268190 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013154	pseudogene	Chr8:86958380-86958833 (-)
WSB/EiJ	MGP_WSBEiJ_G0012890	pseudogene	Chr5:151708883-151709348 (-)

Homology

• Gene Tree
  Gm29778
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000106939 (Evidence)
• NCBI Gene
  101056097

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106939	Ensembl Gene Model | MGI Sequence Detail	466	C57BL/6J
transcript	ENSMUST00000201667	Ensembl | MGI Sequence Detail	466	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm29778:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54516	Chr5:147263166-147263191 (-)	-35 bp