Gm29797 Gene Detail

Summary

• Symbol
  Gm29797
• Name
  predicted gene, 29797

• Feature Type
  protein coding gene
• IDs
  MGI:5588956
  NCBI Gene: 101056205
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:181298827-181301260 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5588956	protein coding gene	Chr2:181297555-181301407 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  C20orf204, chromosome 20 open reading frame 204

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  C20orf204, chromosome 20 open reading frame 204
  
• Synonyms
  LINC00176, NCRNA00176, PRR17
• Links
  HGNC:27655

  NCBI Gene ID: 284739

  neXtProt AC: NX_A0A1B0GTL2

  UniProt: A0A1B0GTL2

  
  
• Chr Location
  20q13.33; chr20:64033709-64039962 (+)  GRCh38

---

• MGI Vertebrate Homology
  Gm29797 stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: C20orf204
• Gene Tree
  Gm29797
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  6
• UniProt
  1

• Ensembl
  ENSMUSG00000108976 (Evidence)
• NCBI Gene
  101056205

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108976	Ensembl Gene Model | MGI Sequence Detail	2434	C57BL/6J
transcript	ENSMUST00000207856	Ensembl | MGI Sequence Detail	755	Not Applicable
polypeptide	ENSMUSP00000146742	Ensembl | MGI Sequence Detail	188	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000059652 uncharacterized protein C20orf204
  (term hierarchy)
• GlyGen
  A0A140LIA7 1 site

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155221 Mouse Genome Informatics, et al., Protein Ontology Association Load. Database Release. 2010;

TSS for Gm29797:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22335	Chr2:181298672-181298693 (+)	-144 bp