Gm30339 Gene Detail

Summary

• Symbol
  Gm30339
• Name
  predicted gene, 30339

• Feature Type
  lncRNA gene
• IDs
  MGI:5589498
  NCBI Gene: 102632199
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr15:93632294-93636371 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  243 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589498	lncRNA gene	Chr15:93604330-93639735 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm30339
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm30339
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  5

• Ensembl
  ENSMUSG00000116237 (Evidence)
• NCBI Gene
  102632199

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116237	Ensembl Gene Model | MGI Sequence Detail	4078	C57BL/6J
transcript	ENSMUST00000231054	Ensembl | MGI Sequence Detail	2538	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 8
• Earliest
  J:103253 Peters J, et al., Koala, Koa, is associated with an inversion on mouse Chromosome 15. Genet Res. 1992;59:237-8 (Abstract)
• Latest
  J:155838 Katayama K, et al., Characterization of the chromosomal inversion associated with the Koa mutation in the mouse revealed the cause of skeletal abnormalities. BMC Genet. 2009;10:60