1700052H01Rik Gene Detail

Summary

• Symbol
  1700052H01Rik
• Name
  RIKEN cDNA 1700052H01 gene
• Synonyms
  Gm30852

• Feature Type
  lncRNA gene
• IDs
  MGI:1920712
  NCBI Gene: 73462
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:41310305-41324074 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  492 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920712	lncRNA gene	Chr3:41308582-41348024 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006173	lincRNA gene	Chr3:39352654-39392994 (+)
A/J	MGP_AJ_G0006165	lincRNA gene	Chr3:38394463-38433556 (+)
AKR/J	MGP_AKRJ_G0006141	lincRNA gene	Chr3:39116651-39158805 (+)
BALB/cJ	MGP_BALBcJ_G0006141	lincRNA gene	Chr3:38164457-38204556 (+)
C3H/HeJ	MGP_C3HHeJ_G0006091	lincRNA gene	Chr3:39239849-39280079 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006303	lincRNA gene	Chr3:40981878-41022619 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005614	lincRNA gene	Chr3:35902440-35941477 (+)
CAST/EiJ	MGP_CASTEiJ_G0006026	lincRNA gene	Chr3:39124112-39164577 (+)
CBA/J	MGP_CBAJ_G0006076	lincRNA gene	Chr3:42134135-42178624 (+)
DBA/2J	MGP_DBA2J_G0006095	lincRNA gene	Chr3:37856005-37895849 (+)
FVB/NJ	MGP_FVBNJ_G0006119	lincRNA gene	Chr3:37232629-37271600 (+)
LP/J	MGP_LPJ_G0006177	lincRNA gene	Chr3:40099227-40139693 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006109	lincRNA gene	Chr3:44586080-44631149 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006307	lincRNA gene	Chr3:38991060-39031345 (+)
PWK/PhJ	MGP_PWKPhJ_G0005971	lincRNA gene	Chr3:37537589-37577762 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005880	lincRNA gene	Chr3:38383952-38424420 (+)
WSB/EiJ	MGP_WSBEiJ_G0006073	lincRNA gene	Chr3:39004296-39043770 (+)

Homology

• Gene Tree
  1700052H01Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving 1700052H01Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000105297 (Evidence)
• NCBI Gene
  73462

Representative Sequences			Length	Strain/Species
genomic	73462	NCBI Gene Model | MGI Sequence Detail	13770	C57BL/6J
transcript	AK006766	GenBank | ENA | DDBJ | MGI Sequence Detail	430	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:5590011

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 1700052H01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28991	Chr3:41308576-41308598 (+)	-1,718 bp