Gm31109 Gene Detail

Summary

• Symbol
  Gm31109
• Name
  predicted gene, 31109

• Feature Type
  lncRNA gene
• IDs
  MGI:5590268
  NCBI Gene: 102633229
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:80400811-80402107 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5590268	lncRNA gene	Chr11:80399537-80402121 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm31109
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm31109
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1

• Ensembl
  ENSMUSG00000127420 (Evidence)
• NCBI Gene
  102633229

Representative Sequences			Length	Strain/Species
genomic	102633229	NCBI Gene Model | MGI Sequence Detail	1297	C57BL/6J
transcript	XR_004937206	RefSeq | MGI Sequence Detail	282	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm31109:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103549	Chr11:80400140-80400157 (+)	-662 bp
Tssr103550	Chr11:80400623-80400624 (+)	-187 bp