Gm32006 Gene Detail

Summary

• Symbol
  Gm32006
• Name
  predicted gene, 32006

• Feature Type
  lncRNA gene
• IDs
  MGI:5591165
  NCBI Gene: 102634421
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr8:120138766-120155735 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  669 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591165	lncRNA gene	Chr8:120133283-120156316 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm32006
  

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000120233 (Evidence)
• NCBI Gene
  102634421

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120233	Ensembl Gene Model | MGI Sequence Detail	16970	C57BL/6J
transcript	ENSMUST00000243619	Ensembl | MGI Sequence Detail	1505	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm32006:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83123	Chr8:120155728-120155762 (-)	-10 bp
Tssr83122	Chr8:120155667-120155676 (-)	63 bp
Tssr83121	Chr8:120153319-120153332 (-)	2,409 bp
Tssr83120	Chr8:120151708-120151741 (-)	4,010 bp
Tssr83119	Chr8:120151083-120151101 (-)	4,643 bp
Tssr83118	Chr8:120151069-120151082 (-)	4,659 bp
Tssr83117	Chr8:120144721-120144729 (-)	11,010 bp
Tssr83116	Chr8:120143657-120143667 (-)	12,073 bp