Gm32117 Gene Detail

Summary

• Symbol
  Gm32117
• Name
  predicted gene, 32117

• Feature Type
  lncRNA gene
• IDs
  MGI:5591276
  NCBI Gene: 102634569
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr4:124630929-124633898 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  188 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5591276	lncRNA gene	Chr4:124630428-124633898 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm32117
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm32117
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000134169 (Evidence)
• NCBI Gene
  102634569

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000134169	Ensembl Gene Model | MGI Sequence Detail	2970	C57BL/6J
transcript	ENSMUST00000322781	Ensembl | MGI Sequence Detail	2226	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm32117:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38904	Chr4:124631441-124631452 (+)	518 bp
Tssr38905	Chr4:124631487-124631499 (+)	564 bp
Tssr38906	Chr4:124631535-124631552 (+)	615 bp
Tssr38907	Chr4:124631591-124631599 (+)	666 bp
Tssr38908	Chr4:124632814-124632848 (+)	1,902 bp