Gm34648 Gene Detail

Summary

• Symbol
  Gm34648
• Name
  predicted gene, 34648
• Synonyms
  Gm43261

• Feature Type
  lncRNA gene
• IDs
  MGI:5593807
  NCBI Gene: 102637968
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:77534446-77541530 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  278 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5593807	lncRNA gene	Chr5:77534419-77541603 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004106	antisense lncRNA gene	Chr5:77675669-77682752 (+)
A/J	MGP_AJ_G0004087	antisense lncRNA gene	Chr5:74659424-74666504 (+)
AKR/J	MGP_AKRJ_G0004065	antisense lncRNA gene	Chr5:77118942-77126020 (+)
BALB/cJ	MGP_BALBcJ_G0004073	antisense lncRNA gene	Chr5:75399539-75406624 (+)
C3H/HeJ	MGP_C3HHeJ_G0004019	antisense lncRNA gene	Chr5:77475909-77483006 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004221	antisense lncRNA gene	Chr5:80754291-80762086 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003698	antisense lncRNA gene	Chr5:70393579-70400756 (+)
CAST/EiJ	MGP_CASTEiJ_G0003982	antisense lncRNA gene	Chr5:76698318-76705433 (+)
CBA/J	MGP_CBAJ_G0004013	antisense lncRNA gene	Chr5:83424292-83431374 (+)
DBA/2J	MGP_DBA2J_G0004028	antisense lncRNA gene	Chr5:74717279-74724443 (+)
FVB/NJ	MGP_FVBNJ_G0004047	antisense lncRNA gene	Chr5:73927684-73935245 (+)
LP/J	MGP_LPJ_G0004108	antisense lncRNA gene	Chr5:78065715-78072767 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004036	antisense lncRNA gene	Chr5:86522406-86529491 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004217	antisense lncRNA gene	Chr5:76665556-76672636 (+)
PWK/PhJ	MGP_PWKPhJ_G0003935	antisense lncRNA gene	Chr5:73742298-73749416 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003880	antisense lncRNA gene	Chr5:76048799-76055828 (+)
WSB/EiJ	MGP_WSBEiJ_G0004017	antisense lncRNA gene	Chr5:76990651-76997770 (+)

Homology

• Gene Tree
  Gm34648
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm34648
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000106828 (Evidence)
• NCBI Gene
  102637968

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106828	Ensembl Gene Model | MGI Sequence Detail	7085	C57BL/6J
transcript	ENSMUST00000202460	Ensembl | MGI Sequence Detail	338	Not Applicable

Other
Accession IDs

MGI:5663398

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm34648:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46794	Chr5:77534868-77534873 (+)	425 bp