Gm35172 Gene Detail

Summary

• Symbol
  Gm35172
• Name
  predicted gene, 35172
• Synonyms
  Gm43253

• Feature Type
  lncRNA gene
• IDs
  MGI:5594331
  NCBI Gene: 102638661
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:99656248-99658896 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594331	lncRNA gene	Chr5:99656232-99658896 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006712	lincRNA gene	Chr5:100905324-100907972 (+)
A/J	MGP_AJ_G0006706	lincRNA gene	Chr5:97178525-97181173 (+)
AKR/J	MGP_AKRJ_G0006676	lincRNA gene	Chr5:100383091-100385739 (+)
BALB/cJ	MGP_BALBcJ_G0006681	lincRNA gene	Chr5:98198582-98201230 (+)
C3H/HeJ	MGP_C3HHeJ_G0006627	lincRNA gene	Chr5:100710983-100713631 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006846	lincRNA gene	Chr5:105148899-105151547 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006103	lincRNA gene	Chr5:92460902-92466627 (+)
CAST/EiJ	MGP_CASTEiJ_G0006550	lincRNA gene	Chr5:99368654-99371303 (+)
CBA/J	MGP_CBAJ_G0006608	lincRNA gene	Chr5:108749018-108751666 (+)
DBA/2J	MGP_DBA2J_G0006629	lincRNA gene	Chr5:97372170-97374818 (+)
FVB/NJ	MGP_FVBNJ_G0006653	lincRNA gene	Chr5:96182978-96185626 (+)
LP/J	MGP_LPJ_G0006713	lincRNA gene	Chr5:101525346-101527994 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006637	lincRNA gene	Chr5:113881096-113883744 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006848	lincRNA gene	Chr5:99848988-99851636 (+)
PWK/PhJ	MGP_PWKPhJ_G0006489	lincRNA gene	Chr5:95810633-95813282 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006395	lincRNA gene	Chr5:97560750-97563391 (+)
WSB/EiJ	MGP_WSBEiJ_G0006601	lincRNA gene	Chr5:100175195-100177843 (+)

Homology

• Gene Tree
  Gm35172
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm35172
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000104753 (Evidence)
• NCBI Gene
  102638661

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104753	Ensembl Gene Model | MGI Sequence Detail	2649	C57BL/6J
transcript	ENSMUST00000196037	Ensembl | MGI Sequence Detail	2649	Not Applicable

Other
Accession IDs

MGI:5663390

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm35172:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47464	Chr5:99656232-99656251 (+)	-6 bp