Gm35216 Gene Detail

Summary

• Symbol
  Gm35216
• Name
  predicted gene, 35216

• Feature Type
  lncRNA gene
• IDs
  MGI:5594375
  NCBI Gene: 102638722
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:44057422-44060289 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594375	lncRNA gene	Chr6:44057422-44060289 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006945	lincRNA gene	Chr6:42717262-42720108 (-)
A/J	MGP_AJ_G0006939	lincRNA gene	Chr6:40851029-40853870 (-)
AKR/J	MGP_AKRJ_G0006909	lincRNA gene	Chr6:42189379-42192672 (-)
BALB/cJ	MGP_BALBcJ_G0006916	lincRNA gene	Chr6:41129188-41132053 (-)
C3H/HeJ	MGP_C3HHeJ_G0006860	lincRNA gene	Chr6:42215710-42218566 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007080	lincRNA gene	Chr6:43787404-43790263 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006326	lincRNA gene	Chr6:38702474-38704579 (-)
CAST/EiJ	MGP_CASTEiJ_G0006777	lincRNA gene	Chr6:41980992-41983853 (-)
CBA/J	MGP_CBAJ_G0006842	lincRNA gene	Chr6:45499774-45502619 (-)
DBA/2J	MGP_DBA2J_G0006862	lincRNA gene	Chr6:40726823-40729670 (-)
FVB/NJ	MGP_FVBNJ_G0006885	lincRNA gene	Chr6:40437582-40440441 (-)
LP/J	MGP_LPJ_G0006945	lincRNA gene	Chr6:42723411-42726267 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006865	lincRNA gene	Chr6:47876730-47880583 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007082	lincRNA gene	Chr6:42127970-42130826 (-)
PWK/PhJ	MGP_PWKPhJ_G0006719	lincRNA gene	Chr6:40268641-40271549 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006627	lincRNA gene	Chr6:41643926-41648684 (-)
WSB/EiJ	MGP_WSBEiJ_G0006832	lincRNA gene	Chr6:42082768-42085640 (-)

Homology

• Gene Tree
  Gm35216
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  5

• Ensembl
  ENSMUSG00000107598 (Evidence)
• NCBI Gene
  102638722

Representative Sequences			Length	Strain/Species
genomic	102638722	NCBI Gene Model | MGI Sequence Detail	2868	C57BL/6J
transcript	NR_167998	RefSeq | MGI Sequence Detail	591	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm35216:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60685	Chr6:44060282-44060300 (-)	-2 bp
Tssr60684	Chr6:44060262-44060279 (-)	18 bp
Tssr60683	Chr6:44060241-44060250 (-)	43 bp