Gm35394 Gene Detail

Summary

• Symbol
  Gm35394
• Name
  predicted gene, 35394
• Synonyms
  Gm43252

• Feature Type
  lncRNA gene
• IDs
  MGI:5594553
  NCBI Gene: 102638959
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:99421954-99427143 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  294 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594553	lncRNA gene	Chr5:99418409-99427143 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006711	lincRNA gene	Chr5:100663565-100668761 (+)
A/J	MGP_AJ_G0006705	lincRNA gene	Chr5:96943965-96949161 (+)
AKR/J	MGP_AKRJ_G0006675	lincRNA gene	Chr5:100137878-100143074 (+)
BALB/cJ	MGP_BALBcJ_G0006680	lincRNA gene	Chr5:97962097-97967293 (+)
C3H/HeJ	MGP_C3HHeJ_G0006626	lincRNA gene	Chr5:100470259-100475455 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006845	lincRNA gene	Chr5:104892316-104897505 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006102	lincRNA gene	Chr5:92231678-92236957 (+)
CAST/EiJ	MGP_CASTEiJ_G0006549	lincRNA gene	Chr5:99118941-99124174 (+)
CBA/J	MGP_CBAJ_G0006607	lincRNA gene	Chr5:108497536-108502732 (+)
DBA/2J	MGP_DBA2J_G0006628	lincRNA gene	Chr5:97136155-97141475 (+)
FVB/NJ	MGP_FVBNJ_G0006652	lincRNA gene	Chr5:95952407-95957603 (+)
LP/J	MGP_LPJ_G0006712	lincRNA gene	Chr5:101279905-101285889 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006636	lincRNA gene	Chr5:113628020-113633215 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006847	lincRNA gene	Chr5:99602477-99607673 (+)
PWK/PhJ	MGP_PWKPhJ_G0006488	lincRNA gene	Chr5:95568534-95573726 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006394	lincRNA gene	Chr5:97304605-97309855 (+)
WSB/EiJ	MGP_WSBEiJ_G0006600	lincRNA gene	Chr5:99930682-99935884 (+)

Homology

• Gene Tree
  Gm35394
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm35394
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4

• Ensembl
  ENSMUSG00000105686 (Evidence)
• NCBI Gene
  102638959

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105686	Ensembl Gene Model | MGI Sequence Detail	5190	C57BL/6J
transcript	ENSMUST00000196434	Ensembl | MGI Sequence Detail	3252	Not Applicable

Other
Accession IDs

MGI:5663389

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm35394:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47457	Chr5:99422510-99422523 (+)	563 bp