Gm35813 Gene Detail

Summary

• Symbol
  Gm35813
• Name
  predicted gene, 35813

• Feature Type
  lncRNA gene
• IDs
  MGI:5594972
  NCBI Gene: 102639516
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:79061629-79068160 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  264 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594972	lncRNA gene	Chr2:79061629-79068160 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm35813
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  2

• NCBI Gene
  102639516

Representative Sequences			Length	Strain/Species
genomic	102639516	NCBI Gene Model | MGI Sequence Detail	6532	C57BL/6J
transcript	XR_866504	RefSeq | MGI Sequence Detail	3634	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm35813:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18541	Chr2:79061605-79061614 (+)	-19 bp
Tssr18542	Chr2:79061620-79061631 (+)	-3 bp
Tssr18543	Chr2:79061635-79061648 (+)	13 bp
Tssr18544	Chr2:79067594-79067615 (+)	5,976 bp