Gm35824 Gene Detail

Summary

• Symbol
  Gm35824
• Name
  predicted gene, 35824

• Feature Type
  lncRNA gene
• IDs
  MGI:5594983
  NCBI Gene: 102639532
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr6:112674612-112675448 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594983	lncRNA gene	Chr6:112674612-112675448 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm35824
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  102639532

Representative Sequences			Length	Strain/Species
genomic	102639532	NCBI Gene Model | MGI Sequence Detail	837	C57BL/6J
transcript	XR_377964	RefSeq | MGI Sequence Detail	723	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:87486 Akeson EC, Chromosomal inversion discovered in C3H/HeJ mice. JAX Notes. 2003;491:15
• Latest
  J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)

TSS for Gm35824:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr58156	Chr6:112673296-112673310 (+)	-1,309 bp
Tssr58157	Chr6:112673313-112673345 (+)	-1,283 bp
Tssr58158	Chr6:112673674-112673714 (+)	-918 bp
Tssr58159	Chr6:112673733-112673747 (+)	-872 bp