Gm36448 Pseudogene Detail

Summary

• Symbol
  Gm36448
• Name
  predicted gene, 36448

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:5595607
  NCBI Gene: 102640376
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:52776109-52778333 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595607	pseudogene	Chr14:52773112-52778813 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040083	pseudogene	Chr14:46611174-46614113 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0040005	pseudogene	Chr14:47030347-47035039 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040650	pseudogene	Chr14:48665960-48668686 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037493	pseudogene	ChrX:6454256-6456711 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039680	pseudogene	Chr14:50157729-50160048 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040748	pseudogene	Chr14:46378691-46381489 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0038706	pseudogene	ChrX:7444033-7446256 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm36448
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm36448
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  2

• Ensembl
  ENSMUSG00000104788 (Evidence)
• NCBI Gene
  102640376

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104788	Ensembl Gene Model | MGI Sequence Detail	2225	C57BL/6J
transcript	ENSMUST00000199916	Ensembl | MGI Sequence Detail	438	Not Applicable
polypeptide	XP_030104099	RefSeq | MGI Sequence Detail	209	C57BL/6J

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;